SNP Profiles matching MAN 15/2

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 Key

 1234567891011121314
_Input profile
CCAACGCCCTCCTTGTCTTTAAAGCTAA
1._MAN_15_/2_[BRA]
CCAACGCCCTCCTTGTCTTTAAAGCTAA
2._RUQ_86
CCAGCGCCCTCCTTGTCTTTAAAGCTAA
3._GC-08-050-1-61
CCAACGCCCT_TTGTCCTTAAAGCTAA
4._GC-08-050-1-61
CCAACGCCCT_TTGTCCTTAAAGCTAA
5._GC-08-050-1-61
CCAACGCCCT_TTGTCCTTAAAGCTAA
6._GC-08-050-1-61
CCAACGCCCT_TTGTCCTTAAAGCTAA
7._GC-08-050-1-61
CCAACGCCCT_TTGTCCTTAAAGCTAA
8._GC-08-050-1-61
CCAACGCCCT_TTGTCCTTAAAGCTAA
9._GC-08-050-1-61
CCAACGCCCT_TTGTCCTTAAAGCTAA
10._LP_1_/41_[POU]
CCAACGCCCT_TTGTCCTTAAAGCTAA
11._LP_1_/41_[POU]
CCAACGCCCT_TTGTCCTTAAAGCTAA
12._LP_1_/41_[POU]
CCAACGCCCT_TTGTCCTTAAAGCTAA
13._LP_1_/41_[POU]
CCAACGCCCT_TTGTCCTTAAAGCTAA
14._LP_1_/41_[POU]
CCAACGCCCT_TTGTCCTTAAAGCTAA
15._LP_1_/41_[POU]
CCAACGCCCT_TTGTCCTTAAAGCTAA
16._LP_1_/41_[POU]
CCAACGCCCT_TTGTCCTTAAAGCTAA
17._LP_1_/41_[POU]
CCAACGCCCT_TTGTCCTTAAAGCTAA
18._LP_1_/41_[POU]
CCAACGCCCT_TTGTCCTTAAAGCTAA
19._LP_1_/41_[POU]
CCAACGCCCT_TTGTCCTTAAAGCTAA
20._GC-05-055-2-06
CCAACGCCCT_TTGTCCTTAAAGCTAA
21._GC-05-055-2-06
CCAACGCCCT_TTGTCCTTAAAGCTAA
22._GC-05-055-2-06
CCAACGCCCT_TTGTCCTTAAAGCTAA
23._GC-05-055-2-06
CCAACGCCCT_TTGTCCTTAAAGCTAA
24._GC-05-055-2-06
CCAACGCCCT_TTGTCCTTAAAGCTAA
25._GC-05-148-4-01
CCAACGCCCT_TTGTCCTTAAAGCTAA
26._GC-05-148-4-01
CCAACGCCCT_TTGTCCTTAAAGCTAA
27._GC-05-148-4-01
CCAACGCCCT_TTGTCCTTAAAGCTAA
28._GC-05-148-4-01
CCAACGCCCT_TTGTCCTTAAAGCTAA
29._GC-05-148-4-01
CCAACGCCCT_TTGTCCTTAAAGCTAA
30._RUQ_86
_AACGCC___-____CTAA
31._MAN_15_/2_[BRA]
CCAACGCCCTCCTTGTCTTTAAGGCTAA
32._MAN_15_/2_[BRA]
CCAACGCCCTCCTTGTCTTTAAGGCTAA
33._GC-05-072-2-23
CCAACGCCCTCCTTGTCTTTAAGGCTAA
34._GC-05-072-2-23
CCAACGCCCTCCTTGTCTTTAAGGCTAA
35._MAN_15_/2_[BRA]
CCAACGCCCT_TTGTCTTTAAGGCTAA
36._MAN_15_/2_[BRA]
CCAACGCCCT_TTGTCTTTAAGGCTAA
37._MAN_15_/2_[BRA]
CCAACGCCCT_TTGTCTTTAAGGCTAA
38._GC-05-072-2-23
CCAACGCCCT_TTGTCTTTAAGGCTAA
39._GC-05-072-2-23
CCAACGCCCT_TTGTCTTTAAGGCTAA
40._GC-05-072-2-23
CCAACGCCCT_TTGTCTTTAAGGCTAA
41._RUQ_87
_AACGCC___-____CTAA
 1516171819202122232425262728
_Input profile
CTAAGGCTCTGGGGAACCACGGGTCCAC
1._MAN_15_/2_[BRA]
_AAGGCTCTGGGGAACCACGGGTCCAC
2._RUQ_86
CTAAGGCTCTGGGGAACCACGGGTCCAC
3._GC-08-050-1-61
CTAAGGCTCTGGGGAACCACGGGTCCAC
4._GC-08-050-1-61
CTAAGGCTCTGGGGAACCACGGGTCCAC
5._GC-08-050-1-61
CTAAGGCTCTGGGGAACCACGGGTCCAC
6._GC-08-050-1-61
CTAAGGCTCTGGGGAACCACGGGTCCAC
7._GC-08-050-1-61
CTAAGGCTCTGGGGAACCACGGGTCCAC
8._GC-08-050-1-61
CTAAGGCTCTGGGGAACCACGGGTCCAC
9._GC-08-050-1-61
CTAAGGCTCTGGGGAACCACGGGTCCAC
10._LP_1_/41_[POU]
CTAAGGCTCTGGGGAACCACGGGTCCAC
11._LP_1_/41_[POU]
CTAAGGCTCTGGGGAACCACGGGTCCAC
12._LP_1_/41_[POU]
CTAAGGCTCTGGGGAACCACGGGTCCAC
13._LP_1_/41_[POU]
CTAAGGCTCTGGGGAACCACGGGTCCAC
14._LP_1_/41_[POU]
CTAAGGCTCTGGGGAACCACGGGTCCAC
15._LP_1_/41_[POU]
CTAAGGCTCTGGGGAACCACGGGTCCAC
16._LP_1_/41_[POU]
CTAAGGCTCTGGGGAACCACGGGTCCAC
17._LP_1_/41_[POU]
CTAAGGCTCTGGGGAACCACGGGTCCAC
18._LP_1_/41_[POU]
CTAAGGCTCTGGGGAACCACGGGTCCAC
19._LP_1_/41_[POU]
CTAAGGCTCTGGGGAACCACGGGTCCAC
20._GC-05-055-2-06
CTAAGGCTCTGGGGAACCACGGGTCCAC
21._GC-05-055-2-06
CTAAGGCTCTGGGGAACCACGGGTCCAC
22._GC-05-055-2-06
CTAAGGCTCTGGGGAACCACGGGTCCAC
23._GC-05-055-2-06
CTAAGGCTCTGGGGAACCACGGGTCCAC
24._GC-05-055-2-06
CTAAGGCTCTGGGGAACCACGGGTCCAC
25._GC-05-148-4-01
CTAAGGCTCTGGGGAACCACGGGTCCAC
26._GC-05-148-4-01
CTAAGGCTCTGGGGAACCACGGGTCCAC
27._GC-05-148-4-01
CTAAGGCTCTGGGGAACCACGGGTCCAC
28._GC-05-148-4-01
CTAAGGCTCTGGGGAACCACGGGTCCAC
29._GC-05-148-4-01
CTAAGGCTCTGGGGAACCACGGGTCCAC
30._RUQ_86
____TTGGGG_CCACCGGTCCAC
31._MAN_15_/2_[BRA]
CTAAGGCTCTGGGGAACCACCGGTCCAC
32._MAN_15_/2_[BRA]
CTAAGGCTCTGGGGAACCACCGGTCCAC
33._GC-05-072-2-23
CTAAGGCTCTGGGGAACCACCGGTCCAC
34._GC-05-072-2-23
CTAAGGCTCTGGGGAACCACCGGTCCAC
35._MAN_15_/2_[BRA]
CTAAGGCTCTGGGGAACCACCGGTCCAC
36._MAN_15_/2_[BRA]
CTAAGGCTCTGGGGAACCACCGGTCCAC
37._MAN_15_/2_[BRA]
CTAAGGCTCTGGGGAACCACCGGTCCAC
38._GC-05-072-2-23
CTAAGGCTCTGGGGAACCACCGGTCCAC
39._GC-05-072-2-23
CTAAGGCTCTGGGGAACCACCGGTCCAC
40._GC-05-072-2-23
CTAAGGCTCTGGGGAACCACCGGTCCAC
41._RUQ_87
____TTGGGG_CCACCGGTCCAC
 293031323334353637383940  
_Input profile
AGGGAATTAGCGACCTGTCCATGGX_XX_X
1._MAN_15_/2_[BRA]
AGGGAATTAGCGACCTGTCCATGGX_XX_X
2._RUQ_86
AGGGAATTAGCGACCTGTCCATGGX_XX_X
3._GC-08-050-1-61
AGGGAATTAGCGAACTGTCCATGGX_XX_X
4._GC-08-050-1-61
AGGGAATTAGCGAACTGTCCATGGX_XX_X
5._GC-08-050-1-61
AGGGAATTAGCGAACTGTCCATGGX_XX_X
6._GC-08-050-1-61
AGGGAATTAGCGAACTGTCCATGGX_XX_X
7._GC-08-050-1-61
AGGGAATTAGCGAACTGTCCATGGX_XX_X
8._GC-08-050-1-61
AGGGAATTAGCGAACTGTCCATGGX_XX_X
9._GC-08-050-1-61
AGGGAATTAGCGAACTGTCCATGGX_XX_X
10._LP_1_/41_[POU]
AGGGAATTAGCGAACTGTCCATGGX_XX_X
11._LP_1_/41_[POU]
AGGGAATTAGCGAACTGTCCATGGX_XX_X
12._LP_1_/41_[POU]
AGGGAATTAGCGAACTGTCCATGGX_XX_X
13._LP_1_/41_[POU]
AGGGAATTAGCGAACTGTCCATGGX_XX_X
14._LP_1_/41_[POU]
AGGGAATTAGCGAACTGTCCATGGX_XX_X
15._LP_1_/41_[POU]
AGGGAATTAGCGAACTGTCCATGGX_XX_X
16._LP_1_/41_[POU]
AGGGAATTAGCGAACTGTCCATGGX_XX_X
17._LP_1_/41_[POU]
AGGGAATTAGCGAACTGTCCATGGX_XX_X
18._LP_1_/41_[POU]
AGGGAATTAGCGAACTGTCCATGGX_XX_X
19._LP_1_/41_[POU]
AGGGAATTAGCGAACTGTCCATGGX_XX_X
20._GC-05-055-2-06
AGGGAATTAGCGAACTGTCCATGGX_XX_X
21._GC-05-055-2-06
AGGGAATTAGCGAACTGTCCATGGX_XX_X
22._GC-05-055-2-06
AGGGAATTAGCGAACTGTCCATGGX_XX_X
23._GC-05-055-2-06
AGGGAATTAGCGAACTGTCCATGGX_XX_X
24._GC-05-055-2-06
AGGGAATTAGCGAACTGTCCATGGX_XX_X
25._GC-05-148-4-01
AGGGAATTAGCGAACTGTCCATGGX_XX_X
26._GC-05-148-4-01
AGGGAATTAGCGAACTGTCCATGGX_XX_X
27._GC-05-148-4-01
AGGGAATTAGCGAACTGTCCATGGX_XX_X
28._GC-05-148-4-01
AGGGAATTAGCGAACTGTCCATGGX_XX_X
29._GC-05-148-4-01
AGGGAATTAGCGAACTGTCCATGGX_XX_X
30._RUQ_86
AG_AATTAGCGACCTGTCC__X_XX_X
31._MAN_15_/2_[BRA]
AGGGAATTAACGAACCGTCCATGGX_XX_X
32._MAN_15_/2_[BRA]
AGGGAATTAACGAACCGTCCATGGX_XX_X
33._GC-05-072-2-23
AGGGAATTAACGAACCGTCCATGGX_XX_X
34._GC-05-072-2-23
AGGGAATTAACGAACCGTCCATGGX_XX_X
35._MAN_15_/2_[BRA]
AGGGAATTAACGAACCGTCCATGGX_XX_X
36._MAN_15_/2_[BRA]
AGGGAATTAACGAACCGTCCATGGX_XX_X
37._MAN_15_/2_[BRA]
AGGGAATTAACGAACCGTCCATGGX_XX_X
38._GC-05-072-2-23
AGGGAATTAACGAACCGTCCATGGX_XX_X
39._GC-05-072-2-23
AGGGAATTAACGAACCGTCCATGGX_XX_X
40._GC-05-072-2-23
AGGGAATTAACGAACCGTCCATGGX_XX_X
41._RUQ_87
AG_AATTAACGACCCGTCC__X_XX_X

Input profile: MAN_15_/2_[BRA]

 
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Malaysian Cocoa Board (MCB), Malaysia
Location: C0297
 Dapeng Zhang, 2016

1._MAN_15_/2_[BRA]

identical
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A N3/476 T2
 Dapeng Zhang, 2016

2._MAN_15_/2_[BRA] RUQ_86

98.8 %
40 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
 Dapeng Zhang, 2016

3._IMC_119 GC-08-050-1-61

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

4._IMC_119 GC-08-050-1-61

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

5._IMC_119 GC-08-050-1-61

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

6._IMC_119 GC-08-050-1-61

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

7._IMC_119 GC-08-050-1-61

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

8._IMC_119 GC-08-050-1-61

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

9._IMC_119 GC-08-050-1-61

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

10._LP_1_/41_[POU]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5401 2 > FP
 Dapeng Zhang, 2016

11._LP_1_/41_[POU]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5401 1 > FP
 Dapeng Zhang, 2016

12._LP_1_/41_[POU]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5401 5
 Dapeng Zhang, 2016

13._LP_1_/41_[POU]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5401 4
 Dapeng Zhang, 2016

14._LP_1_/41_[POU]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5401 3
 Dapeng Zhang, 2016

15._LP_1_/41_[POU]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5206 3 > FP
 Dapeng Zhang, 2016

16._LP_1_/41_[POU]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5206 1 > FP
 Dapeng Zhang, 2016

17._LP_1_/41_[POU]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5206 5
 Dapeng Zhang, 2016

18._LP_1_/41_[POU]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5206 4
 Dapeng Zhang, 2016

19._LP_1_/41_[POU]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5206 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

20._LP_1_/41_[POU] GC-05-055-2-06

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

21._LP_1_/41_[POU] GC-05-055-2-06

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

22._LP_1_/41_[POU] GC-05-055-2-06

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

23._LP_1_/41_[POU] GC-05-055-2-06

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

24._LP_1_/41_[POU] GC-05-055-2-06

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

25._LP_1_/41_[POU] GC-05-148-4-01

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

26._LP_1_/41_[POU] GC-05-148-4-01

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

27._LP_1_/41_[POU] GC-05-148-4-01

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

28._LP_1_/41_[POU] GC-05-148-4-01

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

29._LP_1_/41_[POU] GC-05-148-4-01

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

30._MAN_15_/2_[BRA] RUQ_86

95.7 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

31._MAN_15_/2_[BRA]

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5223 5 > FP
 Dapeng Zhang, 2016

32._MAN_15_/2_[BRA]

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5223 2 > FP
 Dapeng Zhang, 2016

33._MAN_15_/2_[BRA] GC-05-072-2-23

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

34._MAN_15_/2_[BRA] GC-05-072-2-23

93.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

35._MAN_15_/2_[BRA]

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5223 3 > FP
 Dapeng Zhang, 2016

36._MAN_15_/2_[BRA]

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5223 1 > FP
 Dapeng Zhang, 2016

37._MAN_15_/2_[BRA]

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5223 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

38._MAN_15_/2_[BRA] GC-05-072-2-23

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

39._MAN_15_/2_[BRA] GC-05-072-2-23

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

40._MAN_15_/2_[BRA] GC-05-072-2-23

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

41._MAN_15_/60_[BRA] RUQ_87

91.3 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25